Data Resources from the MMseqs2 Family
Our data resources in one place.
6M Marine Eukaryotic Proteins and 89M Profiles
Tara oceans metagenomics datasets assembled with MegaHit. Proteins predicted with MetaEuk.
Metaclust - Clustering of 2B Metagenomic Predicted Proteins
Predicted proteins from >1800 metagenomes and >400 metatranscriptomes with Prodigal. Clustered to 50% and 95% sequence identity with Linclust.
Uniclust - High Quality Clustering of the Uniprot
Clustered to 30%, 50% and 90% sequence identity. Clustered with MMseqs2 and Linclust.
Soil reference catalogue and Marine eukaryotic reference catalogue
SRC: 2B proteins from soil metagenomics. MERC: 300M proteins from marine metatranscriptomics. Assembled with Plass.
Big Fantastic Database - Clustering of SRC and MERC
Over 300M HMMs containing over 2.6B proteins for HHblits. Clustered with MMseqs2 and Linclust.
Pfam and PDB HMMs for HH-suite
Built with MMseqs2 and HH-suite3.
ColabFold databases
Environmental protein databases built for ColabFold - an accessible AlphaFold2 implementation.
Mirdita, Schütze, Moriwaki, Lim, Ovchinnikov, Steinegger, Nature Methods, 2022
Foldcomp databases
Compressed protein structure databases for Foldcomp: a library and format for compressing and indexing large protein structure sets.